{"name":"napari-vizsla","display_name":"Vizsla","visibility":"public","icon":null,"categories":[],"schema_version":"0.3.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-vizsla.make_container_widget","title":"Initialize Vizsla","python_name":"napari_vizsla._widget:Vizsla","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-vizsla.make_container_widget","display_name":"Manual Track Correction","autogenerate":false}],"sample_data":null,"themes":null,"menus":{"napari/layers/track":[{"command":"napari-vizsla.make_container_widget","when":null,"group":null,"alt":null}]},"submenus":null,"keybindings":null,"configurations":{}},"package_metadata":{"metadata_version":"2.4","name":"napari-vizsla","version":"0.2.1","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"Your friendly tracking assistant. Sniff out and fix broken tracks.","description":"# napari-vizsla\n\n[![License MIT](https://img.shields.io/pypi/l/napari-vizsla.svg?color=green)](https://github.com/tlnagy/napari-vizsla/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-vizsla.svg?color=green)](https://pypi.org/project/napari-vizsla)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-vizsla.svg?color=green)](https://python.org)\n[![tests](https://github.com/tlnagy/napari-vizsla/workflows/tests/badge.svg)](https://github.com/tlnagy/napari-vizsla/actions)\n[![codecov](https://codecov.io/gh/tlnagy/napari-vizsla/branch/main/graph/badge.svg)](https://codecov.io/gh/tlnagy/napari-vizsla)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-vizsla)](https://napari-hub.org/plugins/napari-vizsla)\n[![npe2](https://img.shields.io/badge/plugin-npe2-blue?link=https://napari.org/stable/plugins/index.html)](https://napari.org/stable/plugins/index.html)\n[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json)](https://github.com/copier-org/copier)\n\n\n\nYour friendly tracking assistant. Sniff out and fix broken tracks.\n\n----------------------------------\n\nThere are many fantastic tracking libraries out there (e.g. Trackastra, Ultrack, etc) but in my experience they only get ~90% of tracks right from one frame to the next...over a long movie that's a lot of broken tracks! \n\n`napari-vizsla`'s goal is to help you quickly fix these broken tracks. Load your tracks using the Cell-Tracking-Challenge (CTC) format (which many tracking programs can output) and get fixing!\n\nhttps://github.com/user-attachments/assets/07aa9885-f69d-4f8c-a1e6-9e69f6b1b936\n\n## Usage\n\n`napari-vizsla` mostly consists of a set of shortcuts to quickly modify and update tracks. It will autosave your changes as you go!\n\n| Keyboard Shortcut | Action |\n|-------------------|---------------------------------------------------------------------------------------------|\n| `l` | (l)ink tracks. Select two cells, in two different timepoints, and link them into one track. |\n| `b` | (b)reak track. This breaks the track into two tracklets at the given time point. |\n| `h` | (h)ide overlay. Hides Vizsla overlay. |\n| `t` | hide (t)racks. Hides the track layer. |\n| `s` | hide (s)egmentation layer. Helpful to better see the underlying signal layer. |\n\n## Installation\n\nYou can install `napari-vizsla` via [pip]:\n\n```bash\npip install napari-vizsla\n```\n\nIf napari is not already installed, you can install `napari-vizsla` with napari and Qt via:\n\n```bash\npip install \"napari-vizsla[all]\"\n```\n\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-vizsla\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[copier]: https://copier.readthedocs.io/en/stable/\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[napari-plugin-template]: https://github.com/napari/napari-plugin-template\n\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Tamas Nagy","author_email":"github@tamasnagy.com","maintainer":null,"maintainer_email":null,"license":null,"classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13","Programming Language :: Python :: 3.14","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","scikit-image","tracksdata>=0.1.0rc9","polars","napari[all]; extra == \"all\""],"requires_python":">=3.11","requires_external":null,"project_url":null,"provides_extra":["all"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}