{"name":"napari-sprout","display_name":"SPROUT","visibility":"public","icon":null,"categories":[],"schema_version":"0.3.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-sprout.make_widget","title":"SPROUT Main Widget","python_name":"napari_sprout._widget:make_sprout_widget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-sprout.edit_widget","title":"SPROUT Edit Labels","python_name":"napari_sprout._widget:make_sprout_widget_edit","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-sprout.info_widget","title":"SPROUT Data Info","python_name":"napari_sprout._widget:make_sprout_widget_info","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-sprout.map_sprout","title":"SPROUT Label Mapping","python_name":"napari_sprout._widget:make_sprout_widget_map","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-sprout.tools_widget","title":"SPROUT Batch Builder","python_name":"napari_sprout._widget:make_sprout_widget_tools","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-sprout.make_widget","display_name":"SPROUT","autogenerate":false,"default_dock_area":"right","tabify":false},{"command":"napari-sprout.edit_widget","display_name":"Edit","autogenerate":false,"default_dock_area":"right","tabify":false},{"command":"napari-sprout.map_sprout","display_name":"Label Mapping","autogenerate":false,"default_dock_area":"right","tabify":false},{"command":"napari-sprout.tools_widget","display_name":"Batch Builder","autogenerate":false,"default_dock_area":"right","tabify":false},{"command":"napari-sprout.info_widget","display_name":"Data Info","autogenerate":false,"default_dock_area":"right","tabify":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configurations":{}},"package_metadata":{"metadata_version":"2.4","name":"napari-sprout","version":"1.1.0","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"napari plugin for SPROUT: seeds, growing, editing and AI prompts for 2D and 3D segmentation","description":"# napari-sprout\n\nThe napari plugin of [SPROUT](https://github.com/EchanHe/SPROUT): multi-part segmentation of 2D and 3D greyscale images (e.g. CT, MRI) without training data.\n\n- **Seeds**: thresholds and erosion split an image into parts; adaptive and sweep modes combine several settings.\n- **Grow**: seeds grow back to the full shape of each part.\n- **Edit**: split, merge, relabel and clean regions.\n- **Prompt (AI)**: seeds as prompts for nnInteractive.\n- **ROI & Boundary**: work inside a region; make boundary masks.\n\n## Install\n\n```bash\npip install \"napari-sprout[all]\"     # with napari and Qt\npip install napari-sprout            # napari already installed\n```\n\nFor the Prompt (AI) tab also run `pip install \"sprout-seg[ai]\"` (with an NVIDIA GPU, install PyTorch for your CUDA version first).\n\n## Use\n\nStart napari and open **Plugins → SPROUT**. Videos: [SPROUT playlist](https://www.youtube.com/watch?v=4DHI1gs1lzc&list=PL8tsvVKJ9n6FjYYplo-IAwKBLxDh578aj). Docs and the command line (`sprout`): [github.com/EchanHe/SPROUT](https://github.com/EchanHe/SPROUT).\n\n## Cite\n\nY. He, M. Camaiti, L.E. Roberts, J.M. Mulqueeney, E. Ioannou, M. Didziokas, A. Goswami. *SPROUT: A User-friendly, Scalable Toolkit for Multi-class Segmentation of Volumetric Images.* [bioRxiv 2024](https://www.biorxiv.org/content/10.1101/2024.11.22.624847v2.abstract).\n\nMIT License.\n","description_content_type":"text/markdown","keywords":"napari,segmentation,image analysis,micro-CT,CT,MRI,3D,multi-class","home_page":null,"download_url":null,"author":"Yichen He","author_email":null,"maintainer":null,"maintainer_email":null,"license":null,"classifier":["Framework :: napari","Programming Language :: Python :: 3","Operating System :: OS Independent","Intended Audience :: Science/Research","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["sprout-seg~=1.1.0","napari>=0.6.1","qtpy","magicgui","superqt","napari[all]; extra == \"all\"","sprout-seg[ai]~=1.1.0; extra == \"ai\""],"requires_python":">=3.10","requires_external":null,"project_url":["Homepage, https://github.com/EchanHe/SPROUT","Documentation, https://github.com/EchanHe/SPROUT#readme","Issues, https://github.com/EchanHe/SPROUT/issues","Changelog, https://github.com/EchanHe/SPROUT/blob/main/CHANGELOG.md"],"provides_extra":["all","ai"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}