{"name":"napari-openreadout","display_name":"OpenReadout","visibility":"public","icon":null,"categories":["IO"],"schema_version":"0.3.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-openreadout.get_reader","title":"Open a microscopy file with OpenReadout","python_name":"napari_openreadout._reader:get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-openreadout.get_reader","filename_patterns":["*.czi","*.nd2","*.lif","*.lof","*.xlef","*.oir","*.vsi","*.ets","*.zvi","*.oib","*.oif","*.dcimg","*.tif","*.tiff","*.ome.tif","*.ome.tiff","*.btf","*.svs","*.ndpi","*.qptiff","*.lsm","*.stk","*.nd","*.ims","*.zarr","*.mrc","*.map","*.dm3","*.dm4","*.ser","*.emd"],"accepts_directories":true}],"writers":null,"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configurations":{}},"package_metadata":{"metadata_version":"2.5","name":"napari-openreadout","version":"0.4.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"napari reader plugin that opens microscopy files lazily with OpenReadout","description":"# napari-openreadout\n\nA [napari](https://napari.org) reader plugin that opens raw microscopy and electron-microscopy files with [OpenReadout](https://github.com/openreadout/openreadout). The formats it reads are listed at <https://openreadout.github.io/openreadout/formats.html>.\n\n```bash\npip install napari napari-openreadout\nnapari slide.svs\n```\n\n- **Lazy**: layers are dask arrays; a plane (or, for large tiled planes, the tiles under the\n  view) is decoded only when displayed.\n- **Multiscale**: pyramidal files (CZI pyramids, SVS/NDPI/QPTIFF, VSI, Imaris, OME-TIFF with\n  SubIFDs, OME-Zarr multiscales) open as multiscale layers.\n- **Channels** become separate layers named after the file's channels, coloured by their\n  recorded colours; **scale** is the physical pixel size in µm (and the time step in s).\n- Every image of the file (CZI scene, ND2 position, LIF series) is its own layer.\n\nWithout napari, `napari_openreadout.read(path)` returns the same `(data, kwargs, \"image\")` tuples.\n\nGuide: <https://openreadout.github.io/openreadout/guides/napari.html>. Licensed MIT OR Apache-2.0.\n","description_content_type":"text/markdown","keywords":"czi,lif,microscopy,napari,nd2,ome-zarr,svs,whole-slide","home_page":null,"download_url":null,"author":null,"author_email":"The OpenReadout Authors <openreadout@gmail.com>","maintainer":null,"maintainer_email":null,"license":null,"classifier":["Development Status :: 4 - Beta","Framework :: napari","Intended Audience :: Science/Research","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Topic :: Scientific/Engineering :: Image Processing","Typing :: Typed"],"requires_dist":["numpy>=1.22","openreadout[dask]<0.5,>=0.4.0","npe2>=0.7; extra == 'test'","pytest>=7; extra == 'test'"],"requires_python":">=3.10","requires_external":null,"project_url":["Homepage, https://github.com/openreadout/openreadout","Repository, https://github.com/openreadout/openreadout","Documentation, https://openreadout.github.io/openreadout/guides/napari.html"],"provides_extra":["test"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}