{"name":"napari-flopa","display_name":"Flopa","visibility":"public","icon":null,"categories":[],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-flopa.make_flim_widget","title":"Open FLIM Analysis","python_name":"napari_flopa.ui.main_widget:FlimWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-flopa.make_flim_widget","display_name":"FLIM Analysis","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.4","name":"napari-flopa","version":"0.1.0","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"Flim (fluorescence lifetime) image data opening, processing and analysis","description":"# napari-flopa\n\n[![License MIT](https://img.shields.io/badge/license-MIT-green.svg)](LICENSE)\n[![npe2](https://img.shields.io/badge/plugin-npe2-blue)](https://napari.org/stable/plugins/index.html)\n\n<!-- Enable these badges once the package is published to PyPI:\n[![PyPI](https://img.shields.io/pypi/v/napari-flopa.svg?color=green)](https://pypi.org/project/napari-flopa)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-flopa.svg?color=green)](https://python.org)\n-->\n\n\n> **Work in progress** — the plugin is functional but under active development. Expect breaking changes between versions.\n\nA [napari] plugin for opening, processing and analysing FLIM (Fluorescence Lifetime Imaging Microscopy) data from `.ptu` files.\n\n## Features\n\n- **Process PTU** — reconstruct `.ptu` files into xarray datasets (photon count, mean arrival time, phasor, TCSPC histogram); supports multi-frame, multi-sequence and multi-detector data\n- **FLIM View** — interactive display with histogram contrast sliders for intensity and lifetime; FLIM RGB composite; export to TIFF/PNG\n- **Phasor** — phasor plot with calibration, smoothing, per-object or per-pixel scatter, monoexponential lifetime semi-circle overlay\n- **Decay** — TCSPC decay plot with aggregation, normalisation and log scale\n- **Batch** — **NOW DISABLED** process a folder of `.ptu` files with a shared scan config and export images, phasor tables and decay tables; config saved/loaded as json\n\n## Installation\n\n> ⚠️ Not yet released on PyPI. Install from source:\n\n```\ngit clone https://github.com/cockovaz/napari-flopa\ncd napari-flopa\npip install -e \".[all]\"\n```\n\n<!-- Once released on PyPI, installation will be:\n\n    pip install napari-flopa           # plugin only\n    pip install \"napari-flopa[all]\"    # with napari + Qt included\n-->\n\n\n## License\n\nDistributed under the terms of the [MIT] license.\n`napari-flopa` is free and open source software.\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[MIT]: http://opensource.org/licenses/MIT\n[file an issue]: https://github.com/cockovaz/napari-flopa/issues\n[pip]: https://pypi.org/project/pip/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"Zuzana Cockova <cockovaz@natur.cuni.cz>","maintainer":null,"maintainer_email":null,"license":"The MIT License (MIT)\n\nCopyright (c) 2025 Zuzana Cockova\n\nPermission is hereby granted, free of charge, to any person obtaining a copy\nof this software and associated documentation files (the \"Software\"), to deal\nin the Software without restriction, including without limitation the rights\nto use, copy, modify, merge, publish, distribute, sublicense, and/or sell\ncopies of the Software, and to permit persons to whom the Software is\nfurnished to do so, subject to the following conditions:\n\nThe above copyright notice and this permission notice shall be included in\nall copies or substantial portions of the Software.\n\nTHE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\nIMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\nFITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\nAUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\nLIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\nOUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\nTHE SOFTWARE.\n","classifier":["Development Status :: 3 - Alpha","Framework :: napari","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","qtpy","xarray","scipy","matplotlib<3.11","superqt","tttrkit==0.1.0rc2","napari[all]; extra == \"all\""],"requires_python":">=3.11","requires_external":null,"project_url":["Homepage, https://github.com/cockovaz/napari-flopa","Bug Tracker, https://github.com/cockovaz/napari-flopa/issues","Source Code, https://github.com/cockovaz/napari-flopa"],"provides_extra":["all"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}