{"name":"biopb-mcp","display_name":"BioPB","visibility":"public","icon":"","categories":["Utilities","Image Processing"],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"biopb-mcp.make_tensor_browser_widget","title":"Tensor Browser","python_name":"biopb_mcp.tensor_browser:TensorBrowserWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"biopb-mcp.make_object_detection_widget","title":"Object Detection","python_name":"biopb_mcp.image_processing:ObjectDetectionWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"biopb-mcp.make_image_processing_widget","title":"Image Processing","python_name":"biopb_mcp.image_processing:ImageProcessingWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"biopb-mcp.make_tensor_browser_widget","display_name":"Tensor Browser","autogenerate":false},{"command":"biopb-mcp.make_object_detection_widget","display_name":"Object Detection","autogenerate":false},{"command":"biopb-mcp.make_image_processing_widget","display_name":"Image Processing","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.4","name":"biopb-mcp","version":"0.5.1","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"Performing image analysis by visiting biopb endpoints","description":"# biopb-mcp : agentic workflow of bio-image analysis\n\n[![License MIT](https://img.shields.io/pypi/l/biopb-mcp.svg?color=green)](https://github.com/biopb/biopb-mcp/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/biopb-mcp.svg?color=green)](https://pypi.org/project/biopb-mcp)\n[![Python Version](https://img.shields.io/pypi/pyversions/biopb-mcp.svg?color=green)](https://python.org)\n[![tests](https://github.com/biopb/biopb-mcp/workflows/tests/badge.svg)](https://github.com/jiyuuchc/biopb-mcp/actions)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/biopb-mcp)](https://napari-hub.org/plugins/biopb-mcp)\n\n\n**biopb-mcp** is the MCP component of the **[BioPB](https://github.com/jiyuuchc/biopb)** project\n\n\n## Installation - recommended\n\n```\ncurl -fsSL https://biopb.org/install.sh | bash\n```\n\n## Alternative methods\n\nThese methods only install the mcp component without the rest of **[biopb](https://github.com/jiyuuchc/biopb)**  system.\n\n### Bundled Installers\n\nPre-built standalone installers are available from the [Releases](https://github.com/jiyuuchc/biopb-mcp/releases) page. These include napari with the biopb-mcp plugin pre-installed—no Python setup required.\n\n| Platform | Download |\n|----------|----------|\n| Windows | `biopb-mcp-windows.zip` |\n| macOS (Intel) | `biopb-mcp-macos-intel.tar.gz` |\n| macOS (Apple Silicon) | `biopb-mcp-macos-arm.tar.gz` |\n| Linux | `biopb-mcp-linux.tar.gz` |\n\n**Usage:**\n- **Windows**: Extract the zip and run `biopb-mcp.exe`\n- **macOS**: Extract and open `biopb-mcp.app` (right-click → \"Open\" to bypass Gatekeeper for unsigned apps)\n- **Linux**: Extract and run `./biopb-mcp`\n\n### From PyPI\n\nFor users with existing virtual environement setup for napari: install `biopb-mcp` via [pip]:\n\n    pip install biopb-mcp\n\n### Development Version\n\nTo install latest development version:\n\n    pip install git+https://github.com/biopb/biopb-mcp.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT](https://github.com/biopb/biopb-mcp/raw/main/LICENSE) license,\n\"biopb-mcp\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[file an issue]: https://github.com/biopb/biopb-mcp/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Ji Yu","author_email":"jyu@uchc.edu","maintainer":null,"maintainer_email":null,"license":"The MIT License (MIT)\n\nCopyright (c) 2025 Ji Yu\n\nPermission is hereby granted, free of charge, to any person obtaining a copy\nof this software and associated documentation files (the \"Software\"), to deal\nin the Software without restriction, including without limitation the rights\nto use, copy, modify, merge, publish, distribute, sublicense, and/or sell\ncopies of the Software, and to permit persons to whom the Software is\nfurnished to do so, subject to the following conditions:\n\nThe above copyright notice and this permission notice shall be included in\nall copies or substantial portions of the Software.\n\nTHE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\nIMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\nFITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\nAUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\nLIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\nOUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\nTHE SOFTWARE.\n","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","pandas","magicgui","qtpy","scikit-image","biopb[tensor]>=0.5.4","opencv-python-headless","grpcio_tools","grpcio-health-checking","platformdirs","tox; extra == \"testing\"","pytest; extra == \"testing\"","pytest-cov; extra == \"testing\"","pytest-qt; extra == \"testing\"","pytest-env; extra == \"testing\"","napari; extra == \"testing\"","pyqt6; extra == \"testing\"","mcp>=1.20; extra == \"testing\"","jupyter_client; extra == \"testing\"","ipykernel; extra == \"testing\"","napari-skimage-regionprops; extra == \"tables\"","mcp>=1.20; extra == \"mcp\"","uvicorn>=0.29; extra == \"mcp\"","jupyter_client; extra == \"mcp\"","ipykernel; extra == \"mcp\"","vedo; extra == \"3d\""],"requires_python":">=3.10","requires_external":null,"project_url":["Bug Tracker, https://github.com/jiyuuchc/biopb-mcp/issues","Documentation, https://github.com/jiyuuchc/biopb-mcp#README.md","Source Code, https://github.com/jiyuuchc/biopb-mcp","User Support, https://github.com/jiyuuchc/biopb-mcp/issues"],"provides_extra":["testing","tables","mcp","3d"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}